A landmark judgment from a 3-judge bench of Supreme Court, categorically declares as follows:

From Para 17,

17. It is clear from the words emphasised hereinabove in the above quotation, this Court in the case of T.T Antony v. State of Kerala has not excluded the registration of a complaint in the nature of a counter-case from the purview of the Code. In our opinion, this Court in that case only held that any further complaint by the same complainant or others against the same accused, subsequent to the registration of a case, is prohibited under the Code because an investigation in this regard would have already started and further complaint against the same accused will amount to an improvement on the facts mentioned in the original complaint, hence will be prohibited under section 162 of the code. This prohibition noticed by this Court, in our opinion, does not apply to counter-complaint by the accused in the first complaint or on his behalf alleging a different version of the said incident.

From Para 23,

23. Be that as it may, if the law laid down by this Court in T.T Antony case is to be accepted as holding that a second complaint in regard to the same incident filed as a counter-complaint is prohibited under the Code then, in our opinion, such conclusion would lead to serious consequences. This will be clear from the hypothetical example given hereinbelow i.e if in regard to a crime committed by the real accused he takes the first opportunity to lodge a false complaint and the same is registered by the jurisdictional police then the aggrieved victim of such crime will be precluded from lodging a complaint giving his version of the incident in question, consequently he will be deprived of his legitimated right to bring the real accused to book. This cannot be the purport of the Code.

Citations : [2004 AIR SC 4320], [2004 ALD CRI 2 906], [2004 CRI LJ 4219], [2004 JCR SC 4 158], [2004 JT SC 7 488], [2004 KLT SC 3 444], [2005 OLR SC 1 43], [2004 PLJR 4 157], [2004 SCALE 7 563], [2004 CRLJ 0 4219], [2004 SCC 13 2922004 ACR 3 2450], [2005 SCC CR 0 211], [2004 SCC 1 292], [2004 JT 7 4881], [2005 JIC 1 1092005 ACC 51 673], [2004 AIR SC 3240], [2004 AIR SC 0 4320], [2004 RCR CRIMINAL 4 294], [2004 SCC 22 292], [2004 SCC 6 528], [2004 AIR SC 5017], [2005 BOMCR CRI SC 1 199], [2004 CRIMES SC 4 20], [2005 SCC CRI 211], [2004 SUPREME 6 528], [2004 ALLLJ 3436], [2004 CRLJ SC 4219], [2004 RCR CRL 4 2942004 ALL LJ 3436], [2004 CRILJ 42192004 JT 7 488], [2004 AIR SCW 5017], [2004 AIR SCW 0 4320]

Other Sources :

https://indiankanoon.org/doc/1054183/

https://www.casemine.com/judgement/in/5609adefe4b0149711412948